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Species Table

This is a table of all species included in TAPscan v4. Protein names (e.g. in the phylogenetic trees) are extended by a (typically five) letter code abbreviating the species, e.g. ORYSA = ORYza SAtiva. These lettercodes are listed in the table below.


5 Letter Code Species Name NCBI TaxID Actions
SORBIRT Sorghum bicolor 4558
SPASU Spatholobus suberectus 455371
SPHAL Sphingopyxis alaskensis RB2256 317655
SPHAR Sphaeroforma arctica 72019
SPHFA Sphagnum fallax 53036
SPHTH Sphaerobacter thermophilus DSM 20745 479434
SPIMU Spirogloea muscicola 2576442
SPIOL Spinacia oleracea 3562
SPIPO Spirodela polyrhiza 29656
SPIPRtrJU Spirogyra pratensis 332123
SPIPRtrPO Spirogyra pratensis 332123
SPIPRtrTI Spirogyra pratensis 332123
SPIPU Spizellomyces punctatus 109760
SPISP Spirogyra Sp. 3181
STAAU Staphylococcus aureus subsp. aureus NCTC 8325 93061
STRAS Striga asiatica 4170
STRAV Streptomyces avermitilis MA-4680 227882
STRCO Streptomyces coelicolor A3 214689
SUAAR Suaeda aralocaspica 224144
SULDE Sulfurimonas denitrificans DSM 1251 326298
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