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Species Table

This is a table of all species included in TAPscan v4. Protein names (e.g. in the phylogenetic trees) are extended by a (typically five) letter code abbreviating the species, e.g. ORYSA = ORYza SAtiva. These lettercodes are listed in the table below.


5 Letter Code Species Name NCBI TaxID Actions
COPCI Coprinopsis cinerea 5346
COLSPtr Coleochaete sp. 42110
COLPS Colwellia psychrerythraea 34H 167879
COLORtrJU Coleochaete orbicularis 3124
COLORtrCO Coleochaete orbicularis 3124
COILA Coix lacryma-jobi 4505
COFCA Coffea canephora 49390
COCSP Coccomyxa subellipsoidea C-169 574566
COCNU Cocos nucifera 13894
CLOSPP67 Closterium sp. NIES-67 (plus strain) 2790670
CLOSPM68 Closterium sp. NIES-68 (minus strain) 2019903
CLOPE Clostridium perfringens ATCC 13124 195103
CLOKL Clostridium kluyveri DSM 555 431943
CLAOK Cladosiphon okamuranus S strain 309737
CLAGO Cladocopium goreaui SCF055-01 2562237
CITSI Citrus sinensis 2711
CITME Citrus medica 171251
CITLA Citrullus lanatus 3654
CITIC Citrus ichangensis 2709
CITGR Citrus grandis 37334
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